pyMaBoSS
pyMaBoSS is a python API for the MaBoSS software. It can be used inside the Colomoto docker. The API is loaded by running the following line in Python:
import maboss
Once loaded, it allows you to quickly load a MaBoSS model:
sim = maboss.load("metastasis.bnd", "metastasis.cfg")
And then to simulate the model and plot the simulation results:
res = sim.run()
res.plot_piechart()
- Tutorials
- pyMaBoSS
- Saving/Restoring results
- UpPMaBoSS notebook for the cell fate model
- Ensemble MaBoSS simulations
- MaBoSS Client-Server example
- Reproducing Montagud Prostate Cancer results with pyMaBoSS
- Observed state transition graphs with the Sizek cell cycle model
- Analysis of the effect of scheduled treatments on a Cell fate Boolean model
- How to use the temporal logic ?