pyMaBoSS
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API
pyMaBoSS
Index
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_
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C
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E
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F
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G
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L
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M
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N
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P
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R
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S
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U
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__init__() (maboss.simulation.Simulation method)
C
continue_from_result() (maboss.simulation.Simulation method)
copy() (maboss.ensemble.Ensemble method)
(maboss.network.Network method)
E
Ensemble (class in maboss.ensemble)
EnsembleResult (class in maboss.ensemble)
F
filter_sensitivity() (in module maboss.pipelines)
filterEnsembleByCluster() (maboss.ensemble.EnsembleResult method)
filterEnsembleByCondition() (maboss.ensemble.EnsembleResult method)
G
get_entropy_trajectory() (maboss.ensemble.EnsembleResult method)
(maboss.result.Result method)
get_entropy_trajectory_error() (maboss.ensemble.EnsembleResult method)
(maboss.result.Result method)
get_fptable() (maboss.ensemble.EnsembleResult method)
(maboss.result.Result method)
get_individual_nodes_probtraj() (maboss.ensemble.EnsembleResult method)
get_individual_states_probtraj() (maboss.ensemble.EnsembleResult method)
get_initial_state() (maboss.simulation.Simulation method)
get_last_nodes_probtraj() (maboss.ensemble.EnsembleResult method)
(maboss.result.Result method)
get_last_states_probtraj() (maboss.ensemble.EnsembleResult method)
(maboss.result.Result method)
get_nodes_probtraj() (maboss.ensemble.EnsembleResult method)
(maboss.result.Result method)
get_nodes_probtraj_error() (maboss.ensemble.EnsembleResult method)
(maboss.result.Result method)
get_output() (maboss.network.Network method)
get_population_ratios() (maboss.upp.UpdatePopulationResults method)
get_states_probtraj() (maboss.ensemble.EnsembleResult method)
(maboss.result.Result method)
get_states_probtraj_errors() (maboss.ensemble.EnsembleResult method)
(maboss.result.Result method)
get_stepwise_probability_distribution() (maboss.upp.UpdatePopulationResults method)
getByCondition() (maboss.ensemble.EnsembleResult method)
getKMeans() (maboss.ensemble.EnsembleResult method)
getStatesKMeans() (maboss.ensemble.EnsembleResult method)
L
load() (in module maboss.gsparser)
loadBNet() (in module maboss.gsparser)
loadSBML() (in module maboss.gsparser)
M
maboss.gsparser
module
maboss.pipelines
module
MaBoSSClient (class in maboss.server)
module
maboss.gsparser
maboss.pipelines
mutate() (maboss.ensemble.Ensemble method)
(maboss.simulation.Simulation method)
mutations (maboss.simulation.Simulation attribute)
N
names (maboss.network.Network attribute)
Network (class in maboss.network)
network (maboss.simulation.Simulation attribute)
P
palette (maboss.simulation.Simulation attribute)
param (maboss.simulation.Simulation attribute)
plot_entropy_trajectory() (maboss.ensemble.EnsembleResult method)
(maboss.result.Result method)
plot_fixpoint() (maboss.ensemble.EnsembleResult method)
(maboss.result.Result method)
plot_node_trajectory() (maboss.ensemble.EnsembleResult method)
(maboss.result.Result method)
plot_piechart() (maboss.ensemble.EnsembleResult method)
(maboss.result.Result method)
plot_trajectory() (maboss.ensemble.EnsembleResult method)
(maboss.result.Result method)
plotStates3D() (maboss.ensemble.EnsembleResult method)
plotSteadyStatesDistribution() (maboss.ensemble.EnsembleResult method)
plotSteadyStatesNodesDistribution() (maboss.ensemble.EnsembleResult method)
plotTSNESteadyStatesDistribution() (maboss.ensemble.EnsembleResult method)
plotTSNESteadyStatesNodesDistribution() (maboss.ensemble.EnsembleResult method)
print_bnd() (maboss.simulation.Simulation method)
print_cfg() (maboss.simulation.Simulation method)
R
Result (class in maboss.result)
run() (maboss.ensemble.Ensemble method)
(maboss.server.MaBoSSClient method)
(maboss.simulation.Simulation method)
(maboss.upp.UpdatePopulation method)
S
save() (maboss.result.Result method)
(maboss.upp.UpdatePopulationResults method)
set_istate() (maboss.ensemble.Ensemble method)
(maboss.network.Network method)
set_models_path() (maboss.ensemble.Ensemble method)
set_output() (maboss.network.Network method)
set_outputs() (maboss.ensemble.Ensemble method)
setDeathNode() (maboss.upp.UpdatePopulation method)
setDivisionNode() (maboss.upp.UpdatePopulation method)
setExternalVariable() (maboss.upp.UpdatePopulation method)
setStepNumber() (maboss.upp.UpdatePopulation method)
simulate_double_mutants() (in module maboss.pipelines)
simulate_single_mutants() (in module maboss.pipelines)
Simulation (class in maboss.simulation)
U
update_parameters() (maboss.simulation.Simulation method)
UpdatePopulation (class in maboss.upp)
UpdatePopulationResults (class in maboss.upp)
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