Loading

Function to import maboss models in Python.

Multiple types are supported: - MaBoSS format (bnd + cfg files) - SBML format (xml files) - BNet format (bnet files) - TabularQual format (xlsx files)

maboss.gsparser.load(bnd_filename, *cfg_filenames, **extra_args)[source]

Loads a network from a MaBoSS format file.

Parameters:
  • bnd_filename (str) – Network file

  • cfg_filename (str) – Configuraton file

Return type:

Simulation

maboss.gsparser.loadBNet(bnet_filename, cfg_filename=None, cmaboss=False)[source]

Loads a network from a MaBoSS format file.

Parameters:
  • bnet_filename (str) – Network file

  • cfg_filename (str) – Configuration file

Return type:

Simulation

maboss.gsparser.loadSBML(sbml_filename, cfg_filename=None, use_sbml_names=False, cmaboss=False)[source]

Loads a network from a SBML format file.

Parameters:
  • sbml_filename (str) – Network file

  • cfg_filename (str) – Configuraton file

  • use_sbml_names (bool) – Use SBML names instead of IDs to name nodes

Return type:

Simulation

maboss.gsparser.loadTabularQual(tabularqual_filename, cmaboss=False)[source]

Loads a network from a TabularQual format file. :param str tabularqual_filename: Network file :rtype: Simulation